miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|84038144|gb|DW173463.1|DW173463 ATCGATCACTCACTTCACTCCCGCGCTCCAAATTGAAGCTCCGATCAGGTTGATCCATGGATCCAGAAGCTGCCCGAACT
GCCCGGGAATCCCTGGAGTTAGTTTTTCAGATGTCAAATATTGTTGACACAGGATTAGATCGCCACACACTTTCTGTATT
GATTGCCCTTTGTGACCTCGGTTTAAACCCTGAAGCACTTGCTGCTGTTGTCAAGGAGTTCCGGCGGGACCCACCATTAA
CCACCACCACCACCACAACACCACCATCTCCACCGCTTCCTTGATCACATAATTCTTCTTTTCTTTCAACTTTTTCTGCT
TCATCTTTCCATTTTAAAATGACTTTTACCCCATGAAAATATATGCAATTTGTATGTTATGAAGAGCTTTTCCATTTTGT
TTTGGATATGGTCCTTTAAGAGTATGCACATGTTTAACACACAAGGGTAATTTTGTCATTTTGGCTCTCTCTTTCCTGTT
ACNNANNAAAAAAAAAAAAAAAATAAANNAACCATGTC




Most similar to sp|Q9M0N8|MZT1B_ARATH

>           GN=Ftl1 PE=1 SV=3
          Length = 183

 Score = 91.7 bits (226), Expect(2) = 9e-21
 Identities = 50/111 (45%), Positives = 70/111 (63%)
 Frame = +2

Query: 242 SLARHMYSPECEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKDSSVEERDH 421
           S  R  YS E EAAVN  +N+    SY Y +L  +FDRD+VAL+G+  FF++ + E+R+ 
Sbjct: 3   SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREG 62

Query: 422 AEMLMEYQNKRGGRVKLQPMVMPQSEFDHAEKGDALYAMELALSLEKLVNE 574
           AE L++ QN+RGGR   Q +  P  +    E G  L AME AL+LEK +N+
Sbjct: 63  AERLLKLQNERGGRALFQDVQKPSQD----EWGKTLEAMEAALALEKNLNQ 109



 Score = 29.6 bits (65), Expect(2) = 9e-21
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 577 LLNLHSVASKNDDVQLADFIESEF-*RTVEAIKK 675
           LL+LH++ S   D  L DF+ES F  + V+ IKK
Sbjct: 111 LLDLHALGSARTDPHLCDFLESHFLDKEVKLIKK 144


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6L482|P2C48_ORYSJ Probable protein phosphatase 2C 48 OS=Oryza
           sativa subsp. japonica GN=Os05g0358500 PE=2 SV=1
          Length = 353

 Score = 97.8 bits (242), Expect(2) = 3e-36
 Identities = 54/86 (62%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
 Frame = +3

Query: 204 AVQLIVHLKPNLPLE*-RIRWCNGQGYYLADEPGVHFVWQPNQESSVLVMSCAFDDYYIE 380
           AVQL V  KPNLP E  RI  CNG+   LADEPGVH VW+P++E   L MS AF DY ++
Sbjct: 207 AVQLTVDFKPNLPQERERIMECNGRVQCLADEPGVHRVWRPDREGPGLAMSRAFGDYCVK 266

Query: 381 DCGVILAPEVTQRRIDNSDQFVILAT 458
           D GVI APEVT RRI   D FVILAT
Sbjct: 267 DYGVISAPEVTHRRITAQDHFVILAT 292



 Score = 74.3 bits (181), Expect(2) = 3e-36
 Identities = 39/58 (67%), Positives = 45/58 (77%)
 Frame = +1

Query: 1   CQFDL*KQSYVVACAAVYDKLPRSRRLDAVQSSCTALSIVKQGGLMVVANVDDSRVVL 174
           C+ DL +QSY+ ACAAV  +L  SRRLDAV S CTALS+VK G L+VVANV DSR VL
Sbjct: 135 CRPDLWRQSYLAACAAVDAELRASRRLDAVHSGCTALSLVKHGDLLVVANVGDSRAVL 192


>sp|Q0WRB2|P2C73_ARATH Probable protein phosphatase 2C 73
           OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1
          Length = 373

 Score = 89.4 bits (220), Expect(2) = 6e-29
 Identities = 47/86 (54%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 204 AVQLIVHLKPNLPLE*-RIRWCNGQGYYLADEPGVHFVWQPNQESSVLVMSCAFDDYYIE 380
           AVQL +  KPNLP E  RI  C G+ + L DEPGVH VWQP+ E+  L MS AF DY I+
Sbjct: 213 AVQLTLDFKPNLPQEKERIIGCKGRVFCLDDEPGVHRVWQPDAETPGLAMSRAFGDYCIK 272

Query: 381 DCGVILAPEVTQRRIDNSDQFVILAT 458
           + G++  PEVTQR I   D F+ILA+
Sbjct: 273 EYGLVSVPEVTQRHISTKDHFIILAS 298



 Score = 58.2 bits (139), Expect(2) = 6e-29
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +1

Query: 4   QFDL*KQSYVVACAAVYDKLPRSRRLDAVQSSCTALSIVKQGGLMVVANVDDSRVVL 174
           +FD+ KQSY+  CA V  +L   R++D+  S  TAL+IV+QG ++ VANV DSR VL
Sbjct: 146 RFDIWKQSYLKTCATVDQELEHHRKIDSYYSGTTALTIVRQGEVIYVANVGDSRAVL 202


>sp|Q9M9W9|P2C34_ARATH Probable protein phosphatase 2C 34
           OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1
          Length = 358

 Score = 96.7 bits (239), Expect(2) = 1e-28
 Identities = 53/86 (61%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +3

Query: 204 AVQLIVHLKPNLPLE*-RIRWCNGQGYYLADEPGVHFVWQPNQESSVLVMSCAFDDYYIE 380
           AVQL V  KPNLP E  RI  CNG+ + L DEPGVH VWQP  ES  L MS AF DY I+
Sbjct: 208 AVQLTVDFKPNLPQEEERIIGCNGRVFCLQDEPGVHRVWQPVDESPGLAMSRAFGDYCIK 267

Query: 381 DCGVILAPEVTQRRIDNSDQFVILAT 458
           D G++  PEVTQR I   DQF+ILAT
Sbjct: 268 DYGLVSVPEVTQRHISIRDQFIILAT 293



 Score = 49.7 bits (117), Expect(2) = 1e-28
 Identities = 25/57 (43%), Positives = 38/57 (66%)
 Frame = +1

Query: 4   QFDL*KQSYVVACAAVYDKLPRSRRLDAVQSSCTALSIVKQGGLMVVANVDDSRVVL 174
           +F + K S++  C AV  +L   R++D+  S  TAL+IV+QG ++ +ANV DSR VL
Sbjct: 141 RFAIWKYSFLKTCEAVDLELEHHRKIDSFNSGTTALTIVRQGDVIYIANVGDSRAVL 197


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M0N8|MZT1B_ARATH Mitotic-spindle organizing protein 1B
           OS=Arabidopsis thaliana GN=At4g09550 PE=1 SV=1
          Length = 71

 Score =  101 bits (251), Expect = 3e-21
 Identities = 50/58 (86%), Positives = 55/58 (94%)
 Frame = +3

Query: 57  MDPEAARTARESLELVFQMSNIVDTGLDRHTLSVLIALCDLGLNPEALAAVVKEFRRD 230
           MD EA+RTARESLELVF+MSNI+DTGLDRHTLSVLIALCDLG+NPEALA VVKE RR+
Sbjct: 1   MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRE 58